Browse "BS-Journal Papers(저널논문)" by Author Palsson, Bernhard O.
Showing results 1 to 36 of 36
| Can the Protein Occupancy Landscape Show the Topologically Isolated Chromosomal Domains in the E. coli Genome?: An Exciting Prospect Cho, Byung-Kwan; Palsson, Bernhard O., MOLECULAR CELL, v.35, no.3, pp.255 - 256, 2009-08 |
| Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow Brunk, Elizabeth; Chang, Roger L.; Xia, Jing; Hefzi, Hooman; Yurkovich, James T.; Kim, Donghyuk; Buckmiller, Evan; et al, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v.115, no.43, pp.11096 - 11101, 2018-10 |
| Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks Qiu, Yu; Nagarajan, Harish; Embree, Mallory; Shieu, Wendy; Abate, Elisa; Juarez, Katy; Cho, Byung-Kwan; et al, NATURE COMMUNICATIONS, v.4, 2013-04 |
| Comparative Analysis of Regulatory Elements between Escherichia coli and Klebsiella pneumoniae by Genome-Wide Transcription Start Site Profiling Kim, Donghyuk; Hong, Jay Sung-Joong; Qiu, Yu; Nagarajan, Harish; Seo, Joo-Hyun; Cho, Byung-Kwan; Tsai, Shih-Feng; et al, PLOS GENETICS, v.8, no.8, 2012-08 |
| CRISPR-aided genome engineering for secondary metabolite biosynthesis in Streptomyces Lee, Yongjae; Hwang, Soonkyu; Kim, Woori; Kim, Jihun; Palsson, Bernhard O.; Cho, Byung-Kwan, JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, v.51, 2024-01 |
| Deciphering the transcriptional regulatory logic of amino acid metabolism Cho, Byung-Kwan; Federowicz, Stephen; Park, Young-Seoub; Zengler, Karsten; Palsson, Bernhard O., NATURE CHEMICAL BIOLOGY, v.8, no.1, pp.65 - 71, 2012-01 |
Discovery of novel secondary metabolites encoded in actinomycete genomes through coculture Kim, Ji Hun; Lee, Namil; Hwang, Soonkyu; Kim, Woori; Lee, Yongjae; Cho, Suhyung; Palsson, Bernhard O.; et al, JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, v.48, no.3-4, 2021-04 |
| Elucidating the Regulatory Elements for Transcription Termination and Posttranscriptional Processing in the Streptomyces clavuligerus Genome Hwang, Soonkyu; Lee, Namil; Choe, Donghui; Lee, Yongjae; Kim, Woori; Jeong, Yujin; Cho, Suhyung; et al, MSYSTEMS, v.6, no.3, 2021-05 |
| Gene Expression Profiling and the Use of Genome-Scale In Silico Models of Escherichia coli for Analysis: Providing Context for Content Lewis, Nathan E.; Cho, Byung-Kwan; Knight, Eric M.; Palsson, Bernhard O., JOURNAL OF BACTERIOLOGY, v.191, no.11, pp.3437 - 3444, 2009-06 |
| Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information Lee, Yongjae; Lee, Namil; Hwang, Soonkyu; Kim, Woori; Cho, Suhyung; Palsson, Bernhard O.; Cho, Byung-Kwan, BMC GENOMICS, v.23, no.1, 2022-01 |
| Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli Cho, Byung-Kwan; Barrett, Christian L.; Knight, Eric M.; Park, Young Seoub; Palsson, Bernhard O., PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v.105, no.49, pp.19462 - 19467, 2008-12 |
| Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states Cho, Byung-Kwan; Kim, Donghyuk; Knight, Eric M.; Zengler, Karsten; Palsson, Bernhard O., BMC BIOLOGY, v.12, 2014-01 |
| Genome-scale reconstructions of the mammalian secretory pathway predict metabolic costs and limitations of protein secretion Gutierrez, Jahir M.; Feizi, Amir; Li, Shangzhong; Kallehauge, Thomas B.; Hefzi, Hooman; Grav, Lise M.; Ley, Daniel; et al, NATURE COMMUNICATIONS, v.11, no.1, pp.1 - 10, 2020-01 |
| Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts Cho, Byung-Kwan; Knight, Eric M.; Barrett, Christian L.; Palsson, Bernhard O., GENOME RESEARCH, v.18, no.6, pp.900 - 910, 2008-06 |
| Genomewide idenqtification of protein binding locations using chromatin immunoprecipitation coupled with microarray Cho, Byung-Kwan; Knight, Eric M.; Palsson, Bernhard O., METHODS IN MOLECULAR BIOLOGY, v.439, no.0, pp.131 - 145, 2008 |
| Microbial regulatory and metabolic networks Cho, Byung-Kwan; Charusanti, Pep; Herrgard, Markus J.; Palsson, Bernhard O., CURRENT OPINION IN BIOTECHNOLOGY, v.18, no.4, pp.360 - 364, 2007-08 |
| Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features Seo, Joo-Hyun; Hong, Jay Sung-Joong; Kim, Donghyuk; Cho, Byung-Kwan; Huang, Tzu-Wen; Tsai, Shih-Feng; Palsson, Bernhard O.; et al, BMC GENOMICS, v.13, 2012-11 |
| Multiplex secretome engineering enhances recombinant protein production and purity Kol, Stefan; Ley, Daniel; Wulff, Tune L.; Decker, Marianne; Arnsdorf, Johnny; Schoffelen, Sanne; Hansen, Anders Holmgaard; et al, NATURE COMMUNICATIONS, v.11, no.1, 2020-04 |
| PCR-based tandem epitope tagging system for Escherichia coli genome engineering Cho, Byung-Kwan; Knight, Eric M.; Palsson, Bernhard O., BIOTECHNIQUES, v.40, no.1, pp.67 - 72, 2006-01 |
| Primary transcriptome and translatome analysis determines transcriptional and translational regulatory elements encoded in the Streptomyces clavuligerus genome Hwang, Soonkyu; Lee, Namil; Jeong, Yujin; Lee, Yongjae; Kim, Woori; Cho, Suhyung; Palsson, Bernhard O.; et al, NUCLEIC ACIDS RESEARCH, v.47, no.12, pp.6114 - 6129, 2019-05 |
| Probing the basis for genotype-phenotype relationships Cho, Byung-Kwan; Palsson, Bernhard O., NATURE METHODS, v.6, no.8, pp.565 - 566, 2009-08 |
| proChIPdb: a chromatin immunoprecipitation database for prokaryotic organisms Decker, Katherine T.; Gao, Ye; Rychel, Kevin; Al Bulushi, Tahani; Chauhan, Siddharth M.; Kim, Donghyuk; Cho, Byung-Kwan; et al, NUCLEIC ACIDS RESEARCH, v.50, no.D1, pp.D1077 - D1084, 2022-01 |
| Revealing genome-scale transcriptional regulatory landscape of OmpR highlights its expanded regulatory roles under osmotic stress in Escherichia coli K-12 MG1655 Seo, Sang Woo; Gao, Ye; Kim, Donghyuk; Szubin, Richard; Yang, Jina; Cho, Byung-Kwan; Palsson, Bernhard O., SCIENTIFIC REPORTS, v.7, 2017-05 |
| RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media Conrad, Tom M.; Frazier, Michael; Joyce, Andrew R.; Cho, Byung-Kwan; Knight, Eric M.; Lewis, Nathan E.; Landick, Robert; et al, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, v.107, no.47, pp.20500 - 20505, 2010-11 |
| Sensitive and accurate identification of protein-DNA binding events in ChIP-chip assays using higher order derivative analysis Barrett, Christian L.; Cho, Byung-Kwan; Palsson, Bernhard O., NUCLEIC ACIDS RESEARCH, v.39, no.5, pp.1656 - 1665, 2011-03 |
| Streptomyces as Microbial Chassis for Heterologous Protein Expression Hwang, Soonkyu; Lee, Yongjae; Kim, Ji Hun; Kim, Gahyeon; Kim, Hyeseong; Kim, Woori; Cho, Suhyung; et al, FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, v.9, 2021-12 |
| Structural and operational complexity of the Geobacter sulfurreducens genome Qiu, Yu; Cho, Byung-Kwan; Park, Young Seoub; Lovley, Derek; Palsson, Bernhard O.; Zengler, Karsten, GENOME RESEARCH, v.20, no.9, pp.1304 - 1311, 2010-09 |
| System-Level Analysis of Transcriptional and Translational Regulatory Elements in Streptomyces griseus Hwang, Soonkyu; Lee, Namil; Choe, Donghui; Lee, Yongjae; Kim, Woori; Kim, Ji Hun; Kim, Gahyeon; et al, FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, v.10, 2022-02 |
| System-level understanding of gene expression and regulation for engineering secondary metabolite production inStreptomyces Lee, Yongjae; Lee, Namil; Hwang, Soonkyu; Kim, Kangsan; Kim, Woori; Kim, Jihun; Cho, Suhyung; et al, JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, v.47, no.9-10, pp.739 - 752, 2020-10 |
| Systems and synthetic biology to elucidate secondary metabolite biosynthetic gene clusters encoded in Streptomyces genomes Lee, Namil; Hwang, Soonkyu; Kim, Woori; Lee, Yongjae; Kim, Ji Hun; Cho, Suhyung; Kim, Hyun Uk; et al, NATURAL PRODUCT REPORTS, v.38, no.7, pp.1330 - 1361, 2021-07 |
| Systems assessment of transcriptional regulation on central carbon metabolism by Cra and CRP Kim, Donghyuk; Seo, Sang Woo; Gao, Ye; Nam, Hojung; Guzman, Gabriela I.; Cho, Byung-Kwan; Palsson, Bernhard O., NUCLEIC ACIDS RESEARCH, v.46, no.6, pp.2901 - 2917, 2018-04 |
| The PurR regulon in Escherichia coli K-12 MG1655 Cho, Byung-Kwan; Federowicz, Stephen A.; Embree, Mallory; Park, Young-Seoub; Kim, Donghyuk; Palsson, Bernhard O., NUCLEIC ACIDS RESEARCH, v.39, no.15, pp.6456 - 6464, 2011-08 |
| The Transcription Unit Architecture of Streptomyces lividans TK24 Lee, Yongjae; Lee, Namil; Jeong, Yujin; Hwang, Soonkyu; Kim, Woori; Cho, Suhyung; Palsson, Bernhard O.; et al, FRONTIERS IN MICROBIOLOGY, v.10, 2019-09 |
| The transcription unit architecture of the Escherichia coli genome Cho, Byung-Kwan; Zengler, Karsten; Qiu, Yu; Park, Young Seoub; Knight, Eric M.; Barrett, Christian L.; Gao, Yuan; et al, NATURE BIOTECHNOLOGY, v.27, no.11, pp.1043 - 115, 2009-11 |
| Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA Cho, Byung-Kwan; Knight, Eric M.; Palsson, Bernhard O., MICROBIOLOGY-SGM, v.152, no.Pt 8, pp.2207 - 2219, 2006-08 |
| Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo Gao, Ye; Lim, Hyun Gyu; Verkler, Hans; Szubin, Richard; Quach, Daniel; Rodionova, Irina; Chen, Ke; et al, NUCLEIC ACIDS RESEARCH, v.49, no.17, pp.9696 - 9710, 2021-09 |
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