Showing results 1 to 19 of 19
Adaptive laboratory evolution of a genome-reduced Escherichia coli![]() Choe, Donghui; Lee, Jun Hyoung; Yoo, Minseob; Hwang, Soonkyu; Sung, Bong Hyun; Cho, Suhyung; Palsson, Bernhard; et al, NATURE COMMUNICATIONS, v.10, 2019-02 |
Deciphering the regulatory codes in bacterial genomes Cho, Byung-Kwan; Palsson, Bernhard; Zengler, Karsten, BIOTECHNOLOGY JOURNAL, v.6, no.9, pp.1052 - 1063, 2011-09 |
Determining the Control Circuitry of Redox Metabolism at the Genome-Scale Federowicz, Stephen; Kim, Donghyuk; Ebrahim, Ali; Lerman, Joshua; Nagarajan, Harish; Cho, Byung-Kwan; Zengler, Karsten; et al, PLOS GENETICS, v.10, no.4, 2014-04 |
Genome-scale analysis of Methicillin-resistant Staphylococcus aureus USA300 reveals a tradeoff between pathogenesis and drug resistance![]() Choe, Donghui; Szubin, Richard; Dahesh, Samira; Cho, Suhyung; Nizet, Victor; Palsson, Bernhard; Cho, Byung-Kwan, SCIENTIFIC REPORTS, v.8, 2018-02 |
High-Level dCas9 Expression Induces Abnormal Cell Morphology in Escherichia coli Cho, Suhyung; Choe, Donghui; Lee, Eunju; Kim, Sun Chang; Palsson, Bernhard; Cho, Byung-Kwan, ACS SYNTHETIC BIOLOGY, v.7, no.4, pp.1085 - 1094, 2018-04 |
Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of Escherichia coli During Adaptive Laboratory Evolution![]() Kang, Minjeong; Kim, Kangsan; Choe, Donghui; Cho, Suhyung; Kim, Sun Chang; Palsson, Bernhard; Cho, Byung-Kwan, FRONTIERS IN MICROBIOLOGY, v.10, 2019-08 |
Iron competition triggers antibiotic biosynthesis in Streptomyces coelicolor during coculture with Myxococcus xanthus![]() Lee, Namil; Kim, Woori; Chung, Jinkyoo; Lee, Yongjae; Cho, Suhyung; Jang, Kyoung-Soon; Kim, Sun Chang; et al, ISME JOURNAL, v.14, no.5, pp.1111 - 1124, 2020-05 |
Mini review: Genome mining approaches for the identification of secondary metabolite biosynthetic gene clusters in Streptomyces![]() Lee, Namil; Hwang, Soonkyu; Kim, Jihun; Cho, Suhyung; Palsson, Bernhard; Cho, Byung-Kwan, COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, v.18, pp.1548 - 1556, 2020-06 |
Minireview: Engineering evolution to reconfigure phenotypic traits in microbes for biotechnological applications Kim, Kangsan; Kang, Minjeong; Cho, Sang-Hyeok; Yoo, Eojin; Kim, Ui-Gi; Cho, Suhyung; Palsson, Bernhard; et al, COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, v.21, pp.563 - 573, 2023-01 |
Re-classification of Streptomyces venezuelae strains and mining secondary metabolite biosynthetic gene clusters![]() Lee, Namil; Choi, Mira; Kim, Woori; Hwang, Soonkyu; Lee, Yongjae; Kim, Ji Hun; Kim, Gahyeon; et al, ISCIENCE, v.24, no.12, 2021-12 |
Recent advances in non-model bacterial chassis construction Hwang, Soonkyu; Joung, Chanyoung; Kim, Woori; Palsson, Bernhard; Cho, Byung-Kwan, CURRENT OPINION IN SYSTEMS BIOLOGY, v.36, 2023-12 |
Repurposing Modular Polyketide Synthases and Non-ribosomal Peptide Synthetases for Novel Chemical Biosynthesis![]() Hwang, Soonkyu; Lee, Namil; Cho, Suhyung; Palsson, Bernhard; Cho, Byung-Kwan, FRONTIERS IN MOLECULAR BIOSCIENCES, v.7, 2020-05 |
Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing Choe, Donghui; Kim, Uigi; Hwang, Soonkyu; Seo, Sang Woo; Kim, Donghyuk; Cho, Suhyung; Palsson, Bernhard; et al, MSYSTEMS, v.8, no.1, 2023-02 |
RiboRid: A low cost, advanced, and ultra-efficient method to remove ribosomal RNA for bacterial transcriptomics![]() Choe, Donghui; Szubin, Richard; Poudel, Saugat; Sastry, Anand; Song, Yoseb; Lee, Yongjae; Cho, Suhyung; et al, PLOS GENETICS, v.17, no.9, 2021-09 |
Serial adaptive laboratory evolution enhances mixed carbon metabolic capacity of Escherichia coli Kim, Kangsan; Choe, Donghui; Kang, Minjeong; Cho, SangHyeok; Cho, Suhyung; Jeong, Ki Jun; Palsson, Bernhard; et al, METABOLIC ENGINEERING, v.83, pp.160 - 171, 2024-05 |
STATR: A simple analysis pipeline of Ribo-Seq in bacteria Choe, Donghui; Palsson, Bernhard; Cho, Byung-Kwan, JOURNAL OF MICROBIOLOGY, v.58, no.3, pp.217 - 226, 2020-03 |
Synthetic 3 '-UTR valves for optimal metabolic flux control in Escherichia coli Choe, Donghui; Kim, Kangsan; Kang, Minjeong; Lee, Seung-Goo; Cho, Suhyung; Palsson, Bernhard; Cho, Byung-Kwan, NUCLEIC ACIDS RESEARCH, v.50, no.7, pp.4171 - 4186, 2022-04 |
Synthetic Biology Tools for Novel Secondary Metabolite Discovery in Streptomyces Lee, Namil; Hwang, Soonkyu; Lee, Yongjae; Cho, Suhyung; Palsson, Bernhard; Cho, Byung-Kwan, JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY, v.29, no.5, pp.667 - 686, 2019-05 |
The architecture of ArgR-DNA complexes at the genome-scale in Escherichia coli![]() Cho, Suhyung; Cho, Yoo-Bok; Kang, Taek Jin; Kim, Sun Chang; Palsson, Bernhard; Cho, Byung-Kwan, NUCLEIC ACIDS RESEARCH, v.43, no.6, pp.3079 - 3088, 2015-03 |
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