Bioinformatic analysis and application of genomic and metabolic information of various organisms = 생물정보학 기법을 활용한 다양한 생물체의 유전체 및 대사정보의 비교 분석과 응용에 관한 연구

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Development of integrated system and novel approach for the effective analysis of large-scale genomic and metabolic information, i.e. complete genome sequences of microorganism, was carried out in Part I. In Chapter 2, the integrated metabolic database system was developed for the query and comparison of the heterogeneous metabolic information obtained from the public databases. Users can obtain the relevant information on the enzymes, biochemical reactions and metabolic reactions from the system. In Chapter 3, a novel analytical approach using the concept of KEGG orthology was introduced to identify the genome-scale characteristics by applying two-step clustering methods. The clustering results were consistent with various phenotypic characteristics of the analyzed organisms and showed different aspect of relationship among the genomes which have been established through rRNA-based comparisons. Subsequently, bioinformatic computation and analysis of the genomic and metabolic information of various microorganisms were performed to identify the global characteristics and possible in silico targets for the experimental and industrial applications in Part II. In Chapter 4, the complete genome sequence of a rumen bacterium, Mannheimia succiniciproducens MBEL55E was analyzed to identify the genomic and metabolic characteristics as well as the relationships among the organisms. Further application of the analysis revealed that the organism is an efficient succinic acid producer. In Chapter 5, the complete genome sequence of a hyperthermophilic bacterium, Thermotoga neapolitana was analyzed to identify the characteristics as well as the applicable targets. Several candidates for the industrial application, i.e. amylases, xylases etc., were identified from the comparative analyses. In Chapter 6, various genomic characteristics of three pseudomonads were compared. The genomic similarities and differences were compared between the genomes. Comparison of the genomic seque...
Advisors
Lee, Sang-Yupresearcher이상엽researcher
Description
한국과학기술원 : 생명화학공학과,
Publisher
한국과학기술원
Issue Date
2006
Identifier
310361/325007  / 020025080
Language
eng
Description

학위논문(박사) - 한국과학기술원 : 생명화학공학과, 2006.8, [ x, 127 p. ]

Keywords

bioinformatics; genome analysis; metabolic pathway; 생물정보학; 게놈 분석; 대사회로; bioinformatics; genome analysis; metabolic pathway; 생물정보학; 게놈 분석; 대사회로

URI
http://hdl.handle.net/10203/29064
Link
http://library.kaist.ac.kr/search/detail/view.do?bibCtrlNo=310361&flag=dissertation
Appears in Collection
CBE-Theses_Ph.D.(박사논문)
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