Functionally Rigid and Degenerate Molecular Shuttles

Abstract

The preparation and dynamic behavior of two functionally rigid and degenerate [2]rotaxanes (1.4PF(6) and 2.4PF(6)) in which a pi-electron deficient tetracationic cyclophane, cyclobis(paraquat-p-phenylene) (CBPOT(4+)) ring, shuttles back and forth between two pi-electron-rich naphthalene (NP) stations by making the passage along an ethynyl-phenylene-(PH)-ethynyl or butadiyne rod, are described. The [2]rotaxanes were synthesized by using the clipping approach to template-directed synthesis, and were characterized by NMR spectroscopic and mass spectrometric analyses. (1)H NMR spectra of both [2]rotaxanes show evidence for the formation of mechanically interlocked structures, resulting in the upfield shifts of the resonances for key protons on the dumbbell-shaped components. In particular, the signals for the peri protons on the NP units in the dumbbell-shaped components experienced significant upfield shifts at low temperatures, just as has been observed in the flexible [2]rotaxanes, Interestingly, the resonances for the same protons did not exhibit a significant upfield shift at 298 K, but rather only a modest shift. This phenomenon arises from the much reduced binding of the ethynyl-NP unit compared to the 1,5-dioxy-NP unit. This effect, in turn, increases the shuttling rate when compared to the 1,5-dioxy-NP-based rotaxane systems investigated previously. The kinetic and thermodynamic data of the shuttling behavior of the CBPOT(4+) ring between the NP units were obtained by variable-temperature NMR spectroscopy and using the coalescence method to calculate the free energies of activation (Delta G(c)(+)) of 9.6 and 10.3 kcal mol (1) for 1.4PF(6) and 2.4PF(6), respectively, probed by using the rotaxane's alpha-bipyridinium protons. The solid-state structure of the free dumbbell-shaped compound (3) shows the fully rigid ethynyl-PH-ethynyl linker with a length (8.1 angstrom) twice as long as that (3.8 angstrom) of the butadiyne linker. Full-atomistic simulations were carried out with the DREIDING force field (FF) to probe the degenerate molecular shuttling processes, and afforded shuttling energy barriers (Delta G(+) = 10.4 kcal mol (1) for 1.4PF(6) and 2.4PF(6)) that are in good agreement with the experimental values (Delta G(c)(+) = 9.6 and 10.3 kcal mol (1) for 1.4PF(6) and 2.4PF(6), respectively, probed by using their alpha-bipyridinium protons).