In this study, bio-inspired urchin-like structured hydroxyapatite (UHdA) and its magnetic composite (UHdA@Fe3O4) were developed for efficient and easy separation of cerium ions (Ce3+) from aquatic waste streams. UHdA and UHdA@Fe3O4 exhibited superior Ce3+ adsorption capacities of 248.39 and 230.01 mg/g-UHdA respectively, compared to a commercial HdA (141.71 mg/g-HdA) due to their hierarchical mesoporous structure and large specific surface area. The adsorption of Ce3+ to UHdA and UHdA@Fe3O4 were heterogeneous, pseudo-secondorder-kinetic, and the rate-limiting step was external mass transfer and intra-particle diffusion. Moreover, thermodynamic studies revealed that the adsorption process was spontaneous and endothermic nature. The high selectivity towards Ce3+ in multi-ionic systems is attributed to the strong affinity between strong Lewis acid (Ce3+) and base (PO43- and OH-) interactions. XRD, FTIR, and XPS analysis demonstrated that the adsorption was mainly attributable to the ion exchange of Ce3+ with Ca2+ and to surface complexation. The desorption of Ce3+ was efficiently accomplished using 0.1 M HNO3. The results suggest that UHdA and UHdA@Fe3O4 could be promising choices for the adsorption and recovery of rare earth elements.