In this paper, we propose a denoising method for hyperspectral images using a joint bilateral filter. The joint bilateral filter with the fused image of hyperspectral image bands is applied on the noisy image bands. This fused image is a single grayscale image that is obtained by the weighted summation of hyperspectral image bands. It retains the features and details of each hyperspectral image band. Therefore the joint bilateral filter with the fused image is powerful in reducing noise while preserving the characteristics of the individual spectral bands. We evaluated the performance of the proposed noise reduction method on hyperspectral imaging systems, which we developed for visible and near-infrared spectral regions. Experimental results show that the proposed method outperforms the conventional approaches, such as the basic bilateral filter.