Showing results 1 to 55 of 55
A computational pipeline for protein structure prediction and analysis at genome scale Shah, M; Passovets, S; Kim, Dongsup; Ellrott, K; Wang, L; Vokler, I; LoCascio, P; et al, BIOINFORMATICS, v.19, no.15, pp.1985 - 1996, 2003-10 |
A corpus for plant-chemical relationships in the biomedical domain Choi, Wonjun; Kim, Baeksoo; Cho, Hyejin; Lee, Doheon; Lee, Hyunju, BMC BIOINFORMATICS, v.17, no.386, 2016-09 |
A Deep Learning-Based Approach for Identifying the Medicinal Uses of Plant-Derived Natural Compounds Yoo, Sunyong; Yang, Hyung Chae; Lee, Seongyeong; Shin, Jaewook; Min, Seyoung; Lee, Eunjoo; Song, Minkeun; et al, FRONTIERS IN PHARMACOLOGY, v.11, 2020-11 |
A feature-based approach to modeling proteinprotein interaction hot spots Cho, Kyu-il; Kim, Dongsup; Lee, Doheon, NUCLEIC ACIDS RESEARCH, v.37, no.8, pp.2672 - 2687, 2009-05 |
AbFlex: designing antibody complementarity determining regions with flexible CDR definition Jeon, Woosung; Kim, Dongsup, BIOINFORMATICS, v.40, no.3, 2024-03 |
Analysis of AML genes in dysregulated molecular networks Lee, Eunjung; Jung, Hyunchul; Radivojac, Predrag; Kim, Jong-Won; Lee, Doheon, BMC BIOINFORMATICS, v.10, 2009 |
Annotating activation/inhibition relationships to protein-protein interactions using Gene Ontology relations Yim, Soorin; Yu, Ha Sun; Jang, Dongjin; Lee, Doheon, BMC SYSTEMS BIOLOGY, v.12, 2018-04 |
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection Jung, Inkyung; Lee, Jae-Hyung; Lee, Soo-Young; Kim, Dong-Sup, BMC BIOINFORMATICS, v.9, 2008-07 |
Architecture of basic building blocks in protein and domain structural interaction networks Moon, HS; Bhak, J; Lee, Kwang-Hyung; Lee, Doheon, BIOINFORMATICS, v.21, pp.1479 - 1486, 2005-04 |
Association analysis of the perturbation of interactions in biological pathways and anticancer drug activity Lee, Junehawk; Lee, Doheon, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, v.470, no.1, pp.137 - 143, 2016-01 |
AtRTPrimer : arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairs database = 애기장대용 RT-PCR 프라이머 데이타베이스 구축link Han, Sang-Jo; 한상조; et al, 한국과학기술원, 2004 |
Binding similarity network of ligand Park, Keun-Wan; Kim, Dong-Sup, PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v.71, no.2, pp.960 - 971, 2008-05 |
Biological function integrated prediction of severe radiographic progression in rheumatoid arthritis: a nested case control study Joo, Young Bin; Kim, Yul; Park, Youngho; Kim, Kwangwoo; Ryu, Jeong Ah; Lee, Seunghun; Bang, So-Young; et al, ARTHRITIS RESEARCH & THERAPY, v.19, 2017-10 |
Building a drug-target network and its applications Lee, So-Young; Park, Keun-Wan; Kim, Dong-Sup, EXPERT OPINION ON DRUG DISCOVERY, v.4, no.11, pp.1177 - 1189, 2009-11 |
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis Carlevaro-Fita, Joana; Lanzos, Andres; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Pedersen, Jakob Skou; Johnson, Rory; et al, COMMUNICATIONS BIOLOGY, v.3, no.1, 2020-02 |
Candidate target genes for the Saccharomyces cerevisiae transcription factor, Yap2 Bang, Seo Young; Kim, Jeong Hoon; Lee, Phil Young; Chi, Seung-Wook; Cho, Sayeon; Yi, Gwan-Su; Myung, Pyung Keun; et al, FOLIA MICROBIOLOGICA, v.58, no.5, pp.403 - 408, 2013-09 |
CODA-ML: context-specific biological knowledge representation for systemic physiology analysis Kwon, Mijin; Yim, Soorin; Kim, Gwangmin; Lee, Saehwan; Jeong, Chungsun; Lee, Doheon, BMC BIOINFORMATICS, v.20, 2019-05 |
CODA: Integrating multi-level context-oriented directed associations for analysis of drug effects Hasun Yu; Jinmyung Jung; Yoon, Seyeol; Kwon, Mijin; Bae, Sunghwa; Yim, Soorin; Lee, Jaehyun; et al, SCIENTIFIC REPORTS, v.7, pp.7519, 2017-08 |
Context-dependent transcriptional regulations between signal transduction pathways Hwang, Sohyun; Kim, Sangwoo; Shin, Heesung; Lee, Doheon, BMC BIOINFORMATICS, v.12, 2011-01 |
DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture Byungwook Lee; Lee, Doheon, NUCLEIC ACIDS RESEARCH, v.36, pp.W60 - W64, 2008-07 |
Detection and analysis of disease-associated single nucleotide polymorphism influencing post-translational modification Kim, Yul; Kang, Chiyong; Min, Bumki; Yi, Gwan-Su, BMC MEDICAL GENOMICS, v.8, 2015 |
Discovering Health Benefits of Phytochemicals with Integrated Analysis of the Molecular Network, Chemical Properties and Ethnopharmacological Evidence Yoo, Sunyong; Kim, Kwansoo; Nam, Hojung; Lee, Doheon, NUTRIENTS, v.10, no.8, 2018-08 |
DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load Jung, Hyunchul; Kim, Hong Sook; Kim, Jeong Yeon; Sun, Jong-Mu; Ahn, Jin Seok; Ahn, Myung-Ju; Park, Keunchil; et al, NATURE COMMUNICATIONS, v.10, no.1, pp.4278, 2019-09 |
Drug repositioning for enzyme modulator based on human metabolite-likeness Lee, Yoon Hyeok; Choi, Hojae; Park, Seongyong; Lee, Boah; Yi, Gwan-Su, BMC BIOINFORMATICS, v.18, no.7, 2017-05 |
Fold recognition by combining profile-profile alignment and support vector machine Han, Sang-Jo; Lee, Byung-chul; Yu, Seung-Taek; Jeong, Chan-Seok; Lee, So-Young; Kim, Dong-Sup, BIOINFORMATICS, v.21, pp.2667 - 2673, 2005-06 |
HIDEEP: a systems approach to predict hormone impacts on drug efficacy based on effect paths Kwon, Mijin; Jung, Jinmyung; Yu, Hasun; Lee, Doheon, SCIENTIFIC REPORTS, v.7, 2017-11 |
Identification of ubiquitin/ubiquitin-like protein modification from tandem mass spectra with various PTMs Kang, Chiyong; Yi, Gwan-Su, BMC BIOINFORMATICS, v.12, 2011-12 |
In silico activity and ADMET profiling of phytochemicals from Ethiopian indigenous aloes using pharmacophore models Bultum, Lemessa Etana; Tolossa, Gemechu Bekele; Kim, Gwangmin; Kwon, Ohhyeon; Lee, Doheon, SCIENTIFIC REPORTS, v.12, no.1, 2022-12 |
In silico profiling of systemic effects of drugs to predict unexpected interactions Yoo, Sunyong; Noh, Kyungrin; Shin, Moonshik; Park, Junseok; Lee, Kwang-Hyung; Nam, Hojung; Lee, Doheon, SCIENTIFIC REPORTS, v.8, no.1612, 2018-01 |
Interaction between bound water molecules and local protein structures: A statistical analysis of the hydrogen bond structures around bound water molecules Hong, Seungpyo; Kim, Dongsup, PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v.84, no.1, pp.43 - 51, 2016-01 |
K-EmoCon, a multimodal sensor dataset for continuous emotion recognition in naturalistic conversations Park, Cheul Young; Cha, Narae; Kang, Soowon; Kim, Auk; Khandoker, Ahsan Habib; Hadjileontiadis, Leontios; Oh, Alice; et al, SCIENTIFIC DATA, v.7, no.1, pp.293, 2020-09 |
K-EmoPhone: A Mobile and Wearable Dataset with In-Situ Emotion, Stress, and Attention Labels Kang, Soowon; Choi, Woohyeok; Park, Cheul Young; Cha, Narae; Kim, Auk; Khandoker, Ahsan Habib; Hadjileontiadis, Leontios; et al, SCIENTIFIC DATA, v.10, no.1, 2023-06 |
KRDS: a web server for evaluating drug resistance mutations in kinases by molecular docking Lee, Aeri; Hong, Seungpyo; Kim, Dongsup, JOURNAL OF CHEMINFORMATICS, v.10, 2018-04 |
Large-scale reverse docking profiles and their applications Lee, Min-Ho; Kim, Dong-Sup, BMC BIOINFORMATICS, v.13, 2012-12 |
Linear predictive coding representation of correlated mutation for protein sequence alignment Jeong, Chan-Seok; Kim, Dong-Sup, BMC BIOINFORMATICS, v.11, no.sup.2, 2010-04 |
Meta-path Based Prioritization of Functional Drug Actions with Multi-Level Biological Networks Yoon, Seyeol; Lee, Doheon, SCIENTIFIC REPORTS, v.9, 2019-04 |
Network-based classification of breast cancer metastasis Chuang, HY; Lee, E; Liu, YT; Lee, Doheon; Ideker, T, MOLECULAR SYSTEMS BIOLOGY, v.3, pp.1073 - 1083, 2007-10 |
Oncopression: gene expression compendium for cancer with matched normal tissues Lee, Jungsul; Choi, Chulhee, BIOINFORMATICS, v.33, no.13, pp.2068 - 2070, 2017-07 |
Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies Lee, Young-suk; Krishnan, Arjun; Zhu, Qian; Troyanskaya, Olga G., BIOINFORMATICS, v.29, no.23, pp.3036 - 3044, 2013-12 |
Petri net-based prediction of therapeutic targets that recover abnormally phosphorylated proteins in muscle atrophy Jung, Jinmyung; Kwon, Mijin; Bae, Sunghwa; Yim, Soorin; Lee, Doheon, BMC SYSTEMS BIOLOGY, v.12, 2018-03 |
Phenotype-oriented network analysis for discovering pharmacological effects of natural compounds Yoo, Sunyong; Nam, Hojung; Lee, Doheon, SCIENTIFIC REPORTS, v.8, 2018-08 |
PLPD: reliable protein localization prediction from imbalanced and overlapped datasets Lee, KiYoung; Kim, Dae-Won; Na, DoKyun; Lee, Kwang-Hyung; Lee, Doheon, NUCLEIC ACIDS RESEARCH, v.34, no.17, pp.4655 - 4666, 2006-10 |
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship Jung, Inkyung; Matsuyama, Akihisa; Yoshida, Minoru; Kim, Dong-Sup, BMC BIOINFORMATICS, v.11, 2010 |
Predicting and improving the protein sequence alignment quality by support vector regression Lee, Min-Ho; Jeong, Chan-Seok; Kim, Dong-Sup, BMC BIOINFORMATICS, v.8, 2007-12 |
Predicting clinical benefit of immunotherapy by antigenic or functional mutations affecting tumour immunogenicity Kim, Kwoneel; Kim, Hong Sook; Kim, Jeong Yeon; Jung, Hyunchul; Sun, Jong-Mu; Ahn, Jin Seok; Ahn, Myung-Ju; et al, NATURE COMMUNICATIONS, v.11, no.1, 2020-02 |
Predicting disease phenotypes based on the molecular networks with Condition-Responsive Correlation Lee, Se-Joon; Lee, Eun-Jung; Lee, Kwang-Hyung; Lee, Do-Heon, INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, v.5, no.2, pp.131 - 142, 2011-03 |
Prediction of compound-target interactions of natural products using large-scale drug and protein information Keum, Jongsoo; Yoo, Sunyong; Lee, Doheon; Nam, Hojung, BMC BIOINFORMATICS, v.17, no.6, pp.219, 2016-07 |
Prediction of protein secondary structure content using amino acid composition an evolutionary information Lee, S; Lee, BC; Kim, Dongsup, PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, v.62, no.4, pp.1107 - 1114, 2006-03 |
Prediction of scaffold proteins based on protein interaction and domain architectures Oh, Kimin; Yi, Gwan-Su, BMC BIOINFORMATICS, v.17, 2016-07 |
PROSPECT II: protein structure prediction program for genome-scale applications Kim, Dongsup; Xu, D; Guo, JT; Ellrott, K; Xu, Y, PROTEIN ENGINEERING, v.16, no.9, pp.641 - 650, 2003-09 |
Protein comparison at the domain architecture level Lee, Byungwook; Lee, Doheon, BMC BIOINFORMATICS, v.10, 2009 |
Reduction of Complex Signaling Networks to a Representative Kernel Kim, Jeong-Rae; Kim, Junil; Kwon, Yung-Keun; Lee, Hwang-Yeol; Heslop-Harrison, Pat; Cho, Kwang-Hyun, SCIENCE SIGNALING (Featured Cover Article 선정. KBS, MBC 등 5개 주요 언론에 보도됨. 한겨레신문, 경향신문 등 8개 일간지에 보도됨. <2012년 기초연구 우수성과(교과부 R&D사업 대표성과)>로 선정), v.4, no.175, 2011-05 |
SigCS base: an integrated genetic information resource for human cerebral stroke Park, Young-Kyu; Bang, Ok Sun; Cha, Min-Ho; Kim, Jaeheup; Cole, John W.; Lee, Doheon; Kim, Young Joo, BMC SYSTEMS BIOLOGY, v.5, no.2, 2011-12 |
The co-regulation mechanism of transcription factors in the human gene regulatory network Kim, Junil; Choi, Minsoo; Kim, Jeong-Rae; Jin, Hua; Kim, V. Narry; Cho, Kwang-Hyun, NUCLEIC ACIDS RESEARCH, v.40, no.18, pp.8849 - 8861, 2012-10 |
Utilizing random Forest QSAR models with optimized parameters for target identification and its application to target-fishing server Lee, Kyoung Yeul; Lee, Minho; Kim, Dongsup, BMC BIOINFORMATICS, v.18, 2017-12 |
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